Recent Publications

@unpublished{dadi:hal-02929857,
 author = {Dadi, K., Varoquaux, G., Houenou, J., Bzdok, D., Thirion, B. and Engemann, D.},
 doi = {10.1101/2020.08.25.266536},
 hal_id = {hal-02929857},
 hal_version = {v1},
 month = {September},
 note = {working paper or preprint},
 title = {{Beyond brain age: Empirically-derived proxy measures of mental health}},
 url = {https://hal.inria.fr/hal-02929857},
 year = {2020}
}

@article{dadi:hal-02904869,
 author = {Dadi, K., Varoquaux, G., Machlouzarides-Shalit, A., Gorgolewski, K., Wassermann, D., Thirion, B. and Mensch, A.},
 hal_id = {hal-02904869},
 hal_version = {v1},
 journal = {{NeuroImage}},
 keywords = {Brain imaging atlases ; Functional networks ; Functional parcellations ; Multi-resolution},
 month = {July},
 number = {221},
 pages = {117126},
 pdf = {https://hal.inria.fr/hal-02904869/file/revised3.pdf},
 publisher = {{Elsevier}},
 title = {{Fine-grain atlases of functional modes for fMRI analysis}},
 url = {https://hal.inria.fr/hal-02904869},
 year = {2020}
}

@inproceedings{nguyen:hal-02888693,
 address = {Vienne, Austria},
 author = {Nguyen, T., Chevalier, J., Thirion, B. and Arlot, S.},
 booktitle = {{37th International Conference on Machine Learning, PMLR 119, 2020}},
 hal_id = {hal-02888693},
 hal_version = {v1},
 month = {July},
 pdf = {https://hal.archives-ouvertes.fr/hal-02888693/file/ako.pdf},
 title = {{Aggregation of Multiple Knockoffs}},
 url = {https://hal.archives-ouvertes.fr/hal-02888693},
 year = {2020}
}

@article{botviniknezer:inserm-02914443,
 author = {Botvinik-Nezer, R., Holzmeister, F., Camerer, C., Dreber, A., Huber, J., Johannesson, M., Kirchler, M., Iwanir, R., Mumford, J., Adcock, R., Avesani, P., Baczkowski, B., Bajracharya, A., Bakst, L., Ball, S., Barilari, M., Bault, N., Beaton, D., Beitner, J., Benoit, R., Berkers, R., Bhanji, J., Biswal, B., Bobadilla-Suarez, S., Bortolini, T., Bottenhorn, K., Bowring, A., Braem, S., Brooks, H., Brudner, E., Calderon, C., Camilleri, J., Castrellon, J., Cecchetti, L., Cieslik, E., Cole, Z., Collignon, O., Cox, R., Cunningham, W., Czoschke, S., Dadi, K., Davis, C., Luca, A., Delgado, M., Demetriou, L., Dennison, J., Di, X., Dickie, E., Dobryakova, E., Donnat, C., Dukart, J., Duncan, N., Durnez, J., Eed, A., Eickhoff, S., Erhart, A., Fontanesi, L., Fricke, G., Fu, S., Galv{\'a}n, A., Gau, R., Genon, S., Glatard, T., Glerean, E., Goeman, J., Golowin, S., Gonz{\'a}lez-Garc{\'i}a, C., Gorgolewski, K., Grady, C., Green, M., Guassi Moreira, J., Guest, O., Hakimi, S., Hamilton, J., Hancock, R., Handjaras, G., Harry, B., Hawco, C., Herholz, P., Herman, G., Heunis, S., Hoffstaedter, F., Hogeveen, J., Holmes, S., Hu, C., Huettel, S., Hughes, M., Iacovella, V., Iordan, A., Isager, P., Isik, A., Jahn, A., Johnson, M., Johnstone, T., Joseph, M., Juliano, A., Kable, J., Kassinopoulos, M., Koba, C., Kong, X., Koscik, T., Kucukboyaci, N., Kuhl, B., Kupek, S., Laird, A., Lamm, C., Langner, R., Lauharatanahirun, N., Lee, H., Lee, S., Leemans, A., Leo, A., Lesage, E., Li, F., Li, M., Lim, P., Lintz, E., Liphardt, S., Losecaat Vermeer, A., Love, B., Mack, M., Malpica, N., Marins, T., Maumet, C., McDonald, K., McGuire, J., Melero, H., M{\'e}ndez Leal, A., Meyer, B., Meyer, K., Mihai, G., Mitsis, G., Moll, J., Nielson, D., Nilsonne, G., Notter, M., Olivetti, E., Onicas, A., Papale, P., Patil, K., Peelle, J., P{\'e}rez, A., Pischedda, D., Poline, J., Prystauka, Y., Ray, S., Reuter-Lorenz, P., Reynolds, R., Ricciardi, E., Rieck, J., Rodriguez-Thompson, A., Romyn, A., Salo, T., Samanez-Larkin, G., Sanz-Morales, E., Schlichting, M., Schultz, D., Shen, Q., Sheridan, M., Silvers, J., Skagerlund, K., Smith, A., Smith, D., Sokol-Hessner, P., Steinkamp, S., Tashjian, S., Thirion, B., Thorp, J., Tingh{\"o}g, G., Tisdall, L., Tompson, S., Toro-Serey, C., Torre Tresols, J., Tozzi, L., Truong, V., Turella, L., van ‘t Veer, A., Verguts, T., Vettel, J., Vijayarajah, S., Vo, K., Wall, M., Weeda, W., Weis, S., White, D., Wisniewski, D., Xifra-Porxas, A., Yearling, E., Yoon, S., Yuan, R., Yuen, K., Zhang, L., Zhang, X., Zosky, J., Nichols, T., Poldrack, R. and Schonberg, T.},
 doi = {10.1038/s41586-020-2314-9},
 hal_id = {inserm-02914443},
 hal_version = {v1},
 journal = {{Nature}},
 month = {June},
 number = {7810},
 pages = {84-88},
 title = {{Variability in the analysis of a single neuroimaging dataset by many teams}},
 url = {https://www.hal.inserm.fr/inserm-02914443},
 volume = {582},
 year = {2020}
}

@article{dockes:hal-02485642,
 author = {Dock{\`e}s, J., Poldrack, R., Primet, R., G{\"o}z{\"u}kan, H., Yarkoni, T., Suchanek, F., Thirion, B. and Varoquaux, G.},
 hal_id = {hal-02485642},
 hal_version = {v2},
 journal = {{eLife}},
 month = {March},
 pdf = {https://hal.archives-ouvertes.fr/hal-02485642/file/main.pdf},
 publisher = {{eLife Sciences Publication}},
 title = {{NeuroQuery, comprehensive meta-analysis of human brain mapping}},
 url = {https://hal.archives-ouvertes.fr/hal-02485642},
 year = {2020}
}

@unpublished{dadi:hal-02496156,
 author = {Dadi, K., Varoquaux, G., Machlouzarides-Shalit, A., Gorgolewski, K., Wassermann, D., Thirion, B. and Mensch, A.},
 hal_id = {hal-02496156},
 hal_version = {v1},
 keywords = {Functional parcellations ; Brain imaging atlases ; Multi-resolution ; Functional networks},
 month = {March},
 note = {working paper or preprint},
 pdf = {https://hal.archives-ouvertes.fr/hal-02496156/file/paper.pdf},
 title = {{Fine-grain atlases of functional modes for fMRI analysis}},
 url = {https://hal.archives-ouvertes.fr/hal-02496156},
 year = {2020}
}

@article{huchuanxia:hal-02523974,
 author = {Huchuan Xia, C., Ma, Z., Cui, Z., Bzdok, D., Thirion, B., Bassett, D., Satterthwaite, T., Shinohara, R. and Witten, D.},
 doi = {10.1002/hbm.24982},
 hal_id = {hal-02523974},
 hal_version = {v1},
 journal = {{Human Brain Mapping}},
 keywords = {Network neuroscience ; Functional connectivity ; Multivariate analysis},
 pdf = {https://hal.archives-ouvertes.fr/hal-02523974/file/Cedric_Witten_2020_HBM_multiscale.pdf},
 publisher = {{Wiley}},
 title = {{Multi-Scale Network Regression for Brain-Phenotype Associations}},
 url = {https://hal.archives-ouvertes.fr/hal-02523974},
 year = {2020}
}

Full list of publications

Short Bio

Bertrand Thirion is the leader of the Parietal team (http://parietal.saclay.inria.fr/), part of INRIA (http://www.inria.fr) research institute, Saclay, France, that develops statistics and machine learning techniques for brain imaging. He contributes both algorithms and software, with a special focus on functional neuroimaging applications. He is involved in the Neurospin(https://www.neurospin-wiki.org) (CEA) (http://cea.fr) neuroimaging center, one of the leading high-field MRI for brain imaging places. Bertrand Thirion is also head of the DATAIA(http://dataia.eu) Institute that federates research on AI, data science and their societal impact in Paris-Saclay University. He has recently been appointed as member of the expert committee in charge of advising the government during the Covid-19 pandemic. Bertrand Thirion is PI of the Karaib AI Chair (http://project.inria.fr/karaib).

Contact

Email: bertrand.thirion@inria.fr

Address: Inria Saclay Île-de-France, Bâtiment Alan Turing, 1 rue Honoré d'Estienne d'Orves, Campus de l'École Polytechnique 91120 Palaiseau

Software

  • Nilearn - A package for statistical analysis and machine learning on functional Magnetic resonance Imaging (fMRI) data
  • Scikit-Learn - Machine learning in Python

More on my Github Page

Team

Engineers

Post-docs

PhD Students

Alumni

Positions

  • PhD/Post-doc positions on machine learning and statistics with applications in neuroimaging (functional Magnetic Resonance Imaging).

This list is fuzzy so please contact me directly for potential opportunities.

Teaching